PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00877g00126.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 329aa    MW: 37365.8 Da    PI: 6.5766
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00877g00126.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-12254279126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +ktelC+ +++tG+C+y ++C+FaHg
  Peaxi162Scf00877g00126.1 254 FKTELCNKWQETGECPYKENCQFAHG 279
                               79***********************8 PP

2zf-CCCH19.61.7e-06292316125
                               --S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                               ykte Cr  +++ +C+yG rC+F H
  Peaxi162Scf00877g00126.1 292 YKTEVCRMVLAGDICPYGHRCHFRH 316
                               9**********55**********88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-17248286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-10250285IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887253281IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9254279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8287320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-11287320IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99291319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MQNENNQSTD DVINTTSAAA APPAISTSGN NKNPFLSSPT STQHFDYFYS SNSPSLTDSD  60
DFAAFATTTT NHHQTGYILE YQQLYNKYTL CLAHLQESIK EVEALSHENE SLRLVNSDLD  120
HRLSLLTQAT IQNCLLSDFN RFGLGQVSDP IRPPNLVPNR APNLRPGIVT EPNIRPERRN  180
VERVTLPKSI SVRSSGYLKL KGQGGKNTEE CKLAYWIDNL EFLSLCVNQQ RVYVPGGKKE  240
EEALEFEVYN QGMFKTELCN KWQETGECPY KENCQFAHGI TELRPVIRHP RYKTEVCRMV  300
LAGDICPYGH RCHFRHTLTE EERRTGALF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-20254320470Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594882.11e-151PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_016495180.11e-151PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLM1D0E81e-148M1D0E8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000785831e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-66C3H family protein